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Journal Article
[1369] Mayordomo, E, Blanco R, Montoya J, Ruiz-Pesini E.  2011.  Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge. BMC Bioinformatics. 12:174(29pp.).
[ARMARARESI08] Mahulea, C, Ramirez A, Recalde L, Silva M.  2008.  Steady state control reference and token conservation laws in continuous Petri net systems. IEEE Transactions on Automation Science and Engineering. 5:307-320.
[ARJuReSi05] Julvez, J, Recalde L, Silva M.  2005.  Steady-state performance evaluation of continuous mono-T-semiflow Petri nets. Automatica. 41:605-616.
[ARReTeSi01] Recalde, L, Teruel E, Silva M.  2001.  Structure Theory of Multi Level Deterministically Synchronized Sequential Processes. Theoretical Computer Science. 254:1-33.
[1475] Requeno, JI, de Miguel G, Blanco R, Colom JM.  2013.  Temporal Logics for Phylogenetic Analysis via Model Checking. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 10(4):1058-1070. Abstract
[ZRS-JIM-01] Zimmermann, A, Rodríguez D, Silva M.  2001.  A Two Phase Optimisation Method for Petri Net Models of Manufacturing Systems. Journal of Intelligent Manufacturing. 12:421-432.
[FeLuMaRe05] Fenner, SA, Lutz JH, Mayordomo E, Reardon P.  2005.  Weakly useful sequences. Information and Computation. 197:41-54.
Conference Proceedings
[RJ_EPEW10] Rodríguez, RJ, Julvez J.  2010.  Accurate Performance Estimation for Stochastic Marked Graphs by Bottleneck Regrowing. EPEW'10: Proceedings of the 7th European Performance Engineering Workshop. 6342:175--190. Abstract
[IPJuBeReSi04] Julvez, J, Bemporad A, Recalde L, Silva M.  2004.  Event-driven optimal control of continuous Petri nets. :69-74.
[1391] Chamizo, GJM, de Casado MG, Rodríguez GJ.  2004.  II Jornadas sobre Domótica y Automatización Industrial. II Jornadas sobre Domótica y Automatización Industrial.
[RM_ISARCS10] Rodríguez, RJ, Merseguer J.  2010.  Integrating Fault-Tolerant Techniques into the Design of Critical Systems. 1st International Symposium on Architecting Critical Systems. 6150:33--51.
[RMB_SERENE10] Rodríguez, RJ, Merseguer J, Bernardi S.  2010.  Modelling and Analysing Resilience as a Security Issue within UML. 2nd International Workshop on Software Engineering for Resilient Systems.
[1412] Álvarez-Jarreta, J, Mayordomo E, Ruiz-Pesini E.  2012.  PHYSER: An Algorithm to Detect Sequencing Errors from Phylogenetic Information. 6th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2012).
Conference Paper
[1319] Cano, E, Rovetto C, Colom JM.  2010.  An Algorithm to Compute the Minimal Siphons in $S^4PR$ Nets. 10th International Workshop on Discrete Event Systems (WODES’2010). :18-23.
[IPReTeSi99] Recalde, L, Teruel E, Silva M.  1999.  Autonomous Continuous PT systems. 1639:107-126.
[IPBaReChSi00] Basile, F, Recalde L, Chiacchio P, Silva M.  2000.  Closed Loop live Petri Net Supervisors for Generalized Mutual Exclusion Constraints. :169-180.
[1372] Catalán, C, Serna F, Blesa A, Rams JM, Colom JM.  2011.  Communication types for manufacturing systems. A proposal to Distributed Control System based on IEC 61499. 7th Annual IEEE Conference on Automation Science and Engineering (CASE 2011).
[IPHRRS01] Hillston, J, Recalde L, Ribaudo M, Silva M.  2001.  A Comparison of the Expressiveness of SPA and Bounded SPN models. :197-206.
[IPSiRe05] Silva, M, Recalde L.  2005.  Continuization of Timed Petri Nets: From Performance Evaluation to Observation and Control.
[IPReHaSi07] Recalde, L, Haddad S, Silva M.  2007.  Continuous Petri Nets: Expressive Power and Decidability Issues. LNCS. 4762:362-377.
[1384] Catalán, C, Serna F, Civera T, Blesa A, Rams JM.  2011.  Control design for machine tools using Domiciano, an IDE based on software components. 16th IEEE International Conference on Emerging Techonologies and Factory Automation (ETFA’2011).
[1371] Serna, F, Catalán C, Blesa A, Rams JM, Colom JM.  2011.  Control software for a cutting glass machine tool built using the COSME platform. A case study. 7th Annual IEEE Conference on Automation Science and Engineering (CASE 2011).
[RP-95-12] Tricas, F, Martínez J.  1995.  Corrección de programas y redes de Petri de alto nivel. :155-164.
[1376] Catalán, C, Serna F, Blesa A, Rams JM, Colom JM.  2011.  COSME: A Distributed Control Platform for Communicating Machine Tools in Agile Manufacturing Systems. 16th IEEE International Conference on Emerging Technologies and Factory Automation (ETFA'2011).
[1317] Rovetto, C, Cano E, Colom JM.  2010.  Deadlock Analysis in Minimal Adaptive Routing Algorithms using Petri Nets. IEEE International Conference on Systems, Man, and Cybernetics (SMC’10). :2619-2626. Abstract